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Prokaryotic Systems Biology

Overview of attention for book
Cover of 'Prokaryotic Systems Biology'

Table of Contents

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    Book Overview
  2. Altmetric Badge
    Chapter 1 Metagenomics as a Tool for Enzyme Discovery: Hydrolytic Enzymes from Marine-Related Metagenomes
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    Chapter 2 Investigating Bacterial Protein Synthesis Using Systems Biology Approaches.
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    Chapter 3 Biology and Assembly of the Bacterial Envelope
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    Chapter 4 Comparative Genomics and Evolutionary Modularity of Prokaryotes
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    Chapter 5 Predicting Functional Interactions Among Genes in Prokaryotes by Genomic Context
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    Chapter 6 Functional Implications of Domain Organization Within Prokaryotic Rhomboid Proteases
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    Chapter 7 Mapping Transcription Regulatory Networks with ChIP-seq and RNA-seq.
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    Chapter 8 Quantitative and Systems-Based Approaches for Deciphering Bacterial Membrane Interactome and Gene Function
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    Chapter 9 Prokaryotic Systems Biology
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    Chapter 10 Genetic Interaction Scoring Procedure for Bacterial Species
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    Chapter 11 Mapping the Protein-Protein Interactome Networks Using Yeast Two-Hybrid Screens.
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    Chapter 12 Biogenesis of Escherichia coli DMSO Reductase: A Network of Participants for Protein Folding and Complex Enzyme Maturation.
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    Chapter 13 Microbial Proteome Profiling and Systems Biology: Applications to Mycobacterium tuberculosis
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    Chapter 14 Structural Aspects of Bacterial Outer Membrane Protein Assembly.
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    Chapter 15 Substrate Interaction Networks of the Escherichia coli Chaperones: Trigger Factor, DnaK and GroEL
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    Chapter 16 Genetic, Biochemical, and Structural Analyses of Bacterial Surface Polysaccharides
Attention for Chapter 1: Metagenomics as a Tool for Enzyme Discovery: Hydrolytic Enzymes from Marine-Related Metagenomes
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About this Attention Score

  • Above-average Attention Score compared to outputs of the same age (54th percentile)
  • Good Attention Score compared to outputs of the same age and source (73rd percentile)

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Chapter title
Metagenomics as a Tool for Enzyme Discovery: Hydrolytic Enzymes from Marine-Related Metagenomes
Chapter number 1
Book title
Prokaryotic Systems Biology
Published in
Advances in experimental medicine and biology, January 2015
DOI 10.1007/978-3-319-23603-2_1
Pubmed ID
Book ISBNs
978-3-31-923602-5, 978-3-31-923603-2
Authors

Popovic, Ana, Tchigvintsev, Anatoly, Tran, Hai, Chernikova, Tatyana N, Golyshina, Olga V, Yakimov, Michail M, Golyshin, Peter N, Yakunin, Alexander F, Ana Popovic, Anatoly Tchigvintsev, Hai Tran, Tatyana N. Chernikova, Olga V. Golyshina, Michail M. Yakimov, Peter N. Golyshin, Alexander F. Yakunin, Chernikova, Tatyana N., Golyshina, Olga V., Yakimov, Michail M., Golyshin, Peter N., Yakunin, Alexander F.

Abstract

This chapter discusses metagenomics and its application for enzyme discovery, with a focus on hydrolytic enzymes from marine metagenomic libraries. With less than one percent of culturable microorganisms in the environment, metagenomics, or the collective study of community genetics, has opened up a rich pool of uncharacterized metabolic pathways, enzymes, and adaptations. This great untapped pool of genes provides the particularly exciting potential to mine for new biochemical activities or novel enzymes with activities tailored to peculiar sets of environmental conditions. Metagenomes also represent a huge reservoir of novel enzymes for applications in biocatalysis, biofuels, and bioremediation. Here we present the results of enzyme discovery for four enzyme activities, of particular industrial or environmental interest, including esterase/lipase, glycosyl hydrolase, protease and dehalogenase.

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X Demographics

The data shown below were collected from the profiles of 5 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 103 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Brazil 2 2%
Portugal 1 <1%
Unknown 100 97%

Demographic breakdown

Readers by professional status Count As %
Student > Bachelor 19 18%
Student > Ph. D. Student 18 17%
Researcher 13 13%
Student > Master 12 12%
Student > Doctoral Student 6 6%
Other 10 10%
Unknown 25 24%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 32 31%
Agricultural and Biological Sciences 30 29%
Environmental Science 5 5%
Medicine and Dentistry 2 2%
Chemistry 2 2%
Other 4 4%
Unknown 28 27%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 3. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 05 December 2015.
All research outputs
#7,729,323
of 23,498,099 outputs
Outputs from Advances in experimental medicine and biology
#1,268
of 5,033 outputs
Outputs of similar age
#107,521
of 356,521 outputs
Outputs of similar age from Advances in experimental medicine and biology
#61
of 272 outputs
Altmetric has tracked 23,498,099 research outputs across all sources so far. This one is in the 44th percentile – i.e., 44% of other outputs scored the same or lower than it.
So far Altmetric has tracked 5,033 research outputs from this source. They typically receive a little more attention than average, with a mean Attention Score of 6.3. This one has gotten more attention than average, scoring higher than 65% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 356,521 tracked outputs that were published within six weeks on either side of this one in any source. This one has gotten more attention than average, scoring higher than 54% of its contemporaries.
We're also able to compare this research output to 272 others from the same source and published within six weeks on either side of this one. This one has gotten more attention than average, scoring higher than 73% of its contemporaries.