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Proteostasis

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Cover of 'Proteostasis'

Table of Contents

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    Book Overview
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    Chapter 1 UPS Activation in the Battle Against Aging and Aggregation-Related Diseases: An Extended Review.
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    Chapter 2 Proteostasis
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    Chapter 3 Proteostasis
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    Chapter 4 Immunodepletion and Immunopurification as Approaches for CSN Research.
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    Chapter 5 Proteostasis
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    Chapter 6 Strategies to Detect Endogenous Ubiquitination of a Target Mammalian Protein.
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    Chapter 7 In Vitro Ubiquitination: Self-Ubiquitination, Chain Formation, and Substrate Ubiquitination Assays.
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    Chapter 8 Isolation of the Ubiquitin-Proteome from Tumor Cell Lines and Primary Cells Using TUBEs.
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    Chapter 9 TUBEs-Mass Spectrometry for Identification and Analysis of the Ubiquitin-Proteome.
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    Chapter 10 Isolation of Ubiquitinated Proteins to High Purity from In Vivo Samples.
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    Chapter 11 Method for the Purification of Endogenous Unanchored Polyubiquitin Chains.
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    Chapter 12 Proteostasis
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    Chapter 13 Proteostasis
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    Chapter 14 Monitoring Ubiquitin-Coated Bacteria via Confocal Microscopy
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    Chapter 15 Detection and Analysis of Cell Cycle-Associated APC/C-Mediated Cellular Ubiquitylation In Vitro and In Vivo.
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    Chapter 16 Detection and Analysis of SUMOylation Substrates In Vitro and In Vivo.
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    Chapter 17 Detection of Protein-Protein Interactions and Posttranslational Modifications Using the Proximity Ligation Assay: Application to the Study of the SUMO Pathway.
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    Chapter 18 Dissecting SUMO Dynamics by Mass Spectrometry.
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    Chapter 19 Proteostasis
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    Chapter 20 Proteostasis
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    Chapter 21 Proteostasis
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    Chapter 22 Analysis of Protein Oligomerization by Electrophoresis.
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    Chapter 23 Blot-MS of Carbonylated Proteins: A Tool to Identify Oxidized Proteins.
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    Chapter 24 Proteostasis
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    Chapter 25 A Simple Protocol for High Efficiency Protein Isolation After RNA Isolation from Mouse Thyroid and Other Very Small Tissue Samples.
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    Chapter 26 Monitoring Target Engagement of Deubiquitylating Enzymes Using Activity Probes: Past, Present, and Future.
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    Chapter 27 Proteostasis
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    Chapter 28 Proteostasis
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    Chapter 29 Proteostasis
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    Chapter 30 Using AlphaScreen(®) to Identify Small-Molecule Inhibitors Targeting a Conserved Host-Pathogen Interaction.
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    Chapter 31 Proteostasis
Attention for Chapter 8: Isolation of the Ubiquitin-Proteome from Tumor Cell Lines and Primary Cells Using TUBEs.
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Chapter title
Isolation of the Ubiquitin-Proteome from Tumor Cell Lines and Primary Cells Using TUBEs.
Chapter number 8
Book title
Proteostasis
Published in
Methods in molecular biology, January 2016
DOI 10.1007/978-1-4939-3756-1_8
Pubmed ID
Book ISBNs
978-1-4939-3754-7, 978-1-4939-3756-1
Authors

Wendy Xolalpa, Lydia Mata-Cantero, Fabienne Aillet, Manuel S. Rodriguez

Editors

Rune Matthiesen

Abstract

Tandem ubiquitin-binding entities (TUBEs) act as molecular traps to isolate polyubiquitylated proteins facilitating the study of this highly reversible posttranslational modification. We provide here sample preparation and adaptations required for TUBE-based enrichment of the ubiquitin proteome from tumor cell lines or primary cells. Our protocol is suitable to identify ubiquitin substrates, enzymes involved in the ubiquitin proteasome pathway, as well as proteasome subunits by mass spectrometry. This protocol was adapted to prepare affinity columns, reduce background, and improve the protein recovery depending on the sample source and necessities.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 15 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 15 100%

Demographic breakdown

Readers by professional status Count As %
Researcher 6 40%
Student > Ph. D. Student 2 13%
Other 1 7%
Unspecified 1 7%
Student > Master 1 7%
Other 1 7%
Unknown 3 20%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 7 47%
Chemistry 2 13%
Business, Management and Accounting 1 7%
Unspecified 1 7%
Agricultural and Biological Sciences 1 7%
Other 1 7%
Unknown 2 13%