Estrogen Receptors
Humana Press
| Chapter title |
RNA-Seq Experiment and Data Analysis.
|
|---|---|
| Chapter number | 9 |
| Book title |
Estrogen Receptors
|
| Published in |
Methods in molecular biology, January 2016
|
| DOI | 10.1007/978-1-4939-3127-9_9 |
| Pubmed ID | |
| Book ISBNs |
978-1-4939-3126-2, 978-1-4939-3127-9
|
| Authors |
Liang, Hanquan, Zeng, Erliang, Hanquan Liang, Erliang Zeng |
| Abstract |
With the ability to obtain tens of millions of reads, high-throughput messenger RNA sequencing (RNA-Seq) data offers the possibility of estimating abundance of isoforms and finding novel transcripts. In this chapter, we describe a protocol to construct an RNA-Seq library for sequencing on Illumina NGS platforms, and a computational pipeline to perform RNA-Seq data analysis. The protocols described in this chapter can be applied to the analysis of differential gene expression in control versus 17β-estradiol treatment of in vivo or in vitro systems. |
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| Unknown | 12 | 39% |