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Metagenomics

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Cover of 'Metagenomics'

Table of Contents

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    Book Overview
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    Chapter 1 Construction of Small-Insert and Large-Insert Metagenomic Libraries.
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    Chapter 2 Extraction of Total DNA and RNA from Marine Filter Samples and Generation of a cDNA as Universal Template for Marker Gene Studies.
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    Chapter 3 Construction and Screening of Marine Metagenomic Large Insert Libraries.
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    Chapter 4 Constructing and Screening a Metagenomic Library of a Cold and Alkaline Extreme Environment.
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    Chapter 5 DNA-, RNA-, and Protein-Based Stable-Isotope Probing for High-Throughput Biomarker Analysis of Active Microorganisms.
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    Chapter 6 Assessing Bacterial and Fungal Diversity in the Plant Endosphere.
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    Chapter 7 Shotgun Metagenomic Sequencing Analysis of Soft-Rot Enterobacteriaceae in Polymicrobial Communities.
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    Chapter 8 Cloning and Expression of Metagenomic DNA in Streptomyces lividans and Subsequent Fermentation for Optimized Production.
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    Chapter 9 Degradation Network Reconstruction Guided by Metagenomic Data.
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    Chapter 10 Novel Tools for the Functional Expression of Metagenomic DNA.
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    Chapter 11 A Microtiter Plate-Based Assay to Screen for Active and Stereoselective Hydrolytic Enzymes in Enzyme Libraries.
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    Chapter 12 Screening for Cellulase Encoding Clones in Metagenomic Libraries.
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    Chapter 13 Liquid Phase Multiplex High-Throughput Screening of Metagenomic Libraries Using p-Nitrophenyl-Linked Substrates for Accessory Lignocellulosic Enzymes.
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    Chapter 14 Screening Glycosyltransferases for Polyphenol Modifications.
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    Chapter 15 Methods for the Isolation of Genes Encoding Novel PHA Metabolism Enzymes from Complex Microbial Communities.
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    Chapter 16 Function-Based Metagenomic Library Screening and Heterologous Expression Strategy for Genes Encoding Phosphatase Activity.
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    Chapter 17 Activity-Based Screening of Metagenomic Libraries for Hydrogenase Enzymes.
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    Chapter 18 Screening for N-AHSL-Based-Signaling Interfering Enzymes.
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    Chapter 19 Mining Microbial Signals for Enhanced Biodiscovery of Secondary Metabolites.
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    Chapter 20 Erratum to: Cloning and Expression of Metagenomic DNA in Streptomyces lividans and Subsequent Fermentation for Optimized Production
Attention for Chapter 11: A Microtiter Plate-Based Assay to Screen for Active and Stereoselective Hydrolytic Enzymes in Enzyme Libraries.
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Chapter title
A Microtiter Plate-Based Assay to Screen for Active and Stereoselective Hydrolytic Enzymes in Enzyme Libraries.
Chapter number 11
Book title
Metagenomics
Published in
Methods in molecular biology, January 2017
DOI 10.1007/978-1-4939-6691-2_11
Pubmed ID
Book ISBNs
978-1-4939-6689-9, 978-1-4939-6691-2
Authors

Dominique Böttcher, Patrick Zägel, Marlen Schmidt, Uwe T. Bornscheuer

Editors

Wolfgang R. Streit, Rolf Daniel

Abstract

A procedure for the high-throughput screening (HTS) of esterases is described. This includes a pretest for discrimination of active and inactive clones using an agar plate overlay assay, the enzyme expression in microtiter plates and the measurement of activity and enantioselectivity (E) of the esterase variants using acetates of secondary alcohols as model substrates. Acetic acid released is converted in an enzyme cascade leading to the stoichiometric formation of NADH, which is quantified in a spectrophotometer. The method allows screening of several thousand mutants per day and has already been successfully applied to identify an esterase mutant with an E > 100 towards an important building block for organic synthesis. This protocol can also be used for lipases and possibly other hydrolases that are expressed in soluble form in conventional E. coli strains.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 15 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 15 100%

Demographic breakdown

Readers by professional status Count As %
Researcher 3 20%
Student > Ph. D. Student 2 13%
Unspecified 1 7%
Student > Doctoral Student 1 7%
Librarian 1 7%
Other 2 13%
Unknown 5 33%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 3 20%
Agricultural and Biological Sciences 2 13%
Arts and Humanities 1 7%
Unspecified 1 7%
Chemical Engineering 1 7%
Other 2 13%
Unknown 5 33%