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Metagenomics

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Cover of 'Metagenomics'

Table of Contents

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    Book Overview
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    Chapter 1 Construction of Small-Insert and Large-Insert Metagenomic Libraries.
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    Chapter 2 Extraction of Total DNA and RNA from Marine Filter Samples and Generation of a cDNA as Universal Template for Marker Gene Studies.
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    Chapter 3 Construction and Screening of Marine Metagenomic Large Insert Libraries.
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    Chapter 4 Constructing and Screening a Metagenomic Library of a Cold and Alkaline Extreme Environment.
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    Chapter 5 DNA-, RNA-, and Protein-Based Stable-Isotope Probing for High-Throughput Biomarker Analysis of Active Microorganisms.
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    Chapter 6 Assessing Bacterial and Fungal Diversity in the Plant Endosphere.
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    Chapter 7 Shotgun Metagenomic Sequencing Analysis of Soft-Rot Enterobacteriaceae in Polymicrobial Communities.
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    Chapter 8 Cloning and Expression of Metagenomic DNA in Streptomyces lividans and Subsequent Fermentation for Optimized Production.
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    Chapter 9 Degradation Network Reconstruction Guided by Metagenomic Data.
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    Chapter 10 Novel Tools for the Functional Expression of Metagenomic DNA.
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    Chapter 11 A Microtiter Plate-Based Assay to Screen for Active and Stereoselective Hydrolytic Enzymes in Enzyme Libraries.
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    Chapter 12 Screening for Cellulase Encoding Clones in Metagenomic Libraries.
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    Chapter 13 Liquid Phase Multiplex High-Throughput Screening of Metagenomic Libraries Using p-Nitrophenyl-Linked Substrates for Accessory Lignocellulosic Enzymes.
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    Chapter 14 Screening Glycosyltransferases for Polyphenol Modifications.
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    Chapter 15 Methods for the Isolation of Genes Encoding Novel PHA Metabolism Enzymes from Complex Microbial Communities.
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    Chapter 16 Function-Based Metagenomic Library Screening and Heterologous Expression Strategy for Genes Encoding Phosphatase Activity.
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    Chapter 17 Activity-Based Screening of Metagenomic Libraries for Hydrogenase Enzymes.
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    Chapter 18 Screening for N-AHSL-Based-Signaling Interfering Enzymes.
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    Chapter 19 Mining Microbial Signals for Enhanced Biodiscovery of Secondary Metabolites.
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    Chapter 20 Erratum to: Cloning and Expression of Metagenomic DNA in Streptomyces lividans and Subsequent Fermentation for Optimized Production
Attention for Chapter 13: Liquid Phase Multiplex High-Throughput Screening of Metagenomic Libraries Using p-Nitrophenyl-Linked Substrates for Accessory Lignocellulosic Enzymes.
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Chapter title
Liquid Phase Multiplex High-Throughput Screening of Metagenomic Libraries Using p-Nitrophenyl-Linked Substrates for Accessory Lignocellulosic Enzymes.
Chapter number 13
Book title
Metagenomics
Published in
Methods in molecular biology, January 2017
DOI 10.1007/978-1-4939-6691-2_13
Pubmed ID
Book ISBNs
978-1-4939-6689-9, 978-1-4939-6691-2
Authors

Mariette Smart, Robert J. Huddy, Don A. Cowan, Marla Trindade

Editors

Wolfgang R. Streit, Rolf Daniel

Abstract

To access the genetic potential contained in large metagenomic libraries, suitable high-throughput functional screening methods are required. Here we describe a high-throughput screening approach which enables the rapid identification of metagenomic library clones expressing functional accessory lignocellulosic enzymes. The high-throughput nature of this method hinges on the multiplexing of both the E. coli metagenomic library clones and the colorimetric p-nitrophenyl linked substrates which allows for the simultaneous screening for β-glucosidases, β-xylosidases, and α-L-arabinofuranosidases. This method is readily automated and compatible with high-throughput robotic screening systems.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 15 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Brazil 2 13%
Unknown 13 87%

Demographic breakdown

Readers by professional status Count As %
Researcher 4 27%
Student > Master 2 13%
Student > Ph. D. Student 2 13%
Student > Doctoral Student 1 7%
Student > Bachelor 1 7%
Other 4 27%
Unknown 1 7%
Readers by discipline Count As %
Agricultural and Biological Sciences 6 40%
Biochemistry, Genetics and Molecular Biology 6 40%
Arts and Humanities 1 7%
Business, Management and Accounting 1 7%
Engineering 1 7%
Other 0 0%