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Histones

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Cover of 'Histones'

Table of Contents

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    Book Overview
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    Chapter 1 In Vitro Assembly of Nucleosomes for Binding/Remodeling Assays.
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    Chapter 2 An Assay for Measuring Histone Variant Exchange within Nucleosomes In Vitro.
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    Chapter 3 Purification of Yeast Native Reagents for the Analysis of Chromatin Function-I: Nucleosomes for Reconstitution and Manipulation of Histone Marks.
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    Chapter 4 Purification of Yeast Native Reagents for the Analysis of Chromatin Function-II: Multiprotein Complexes and Biochemical Assays.
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    Chapter 5 Histone Purification from Saccharomyces cerevisiae.
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    Chapter 6 Analytical Ultracentrifuge Analysis of Nucleosomes Assembled from Recombinant, Acid-Extracted, HPLC-Purified Histones.
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    Chapter 7 SILAC-Based Quantitative Strategies for Accurate Histone Posttranslational Modification Profiling Across Multiple Biological Samples.
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    Chapter 8 Characterization of Individual Histone Posttranslational Modifications and Their Combinatorial Patterns by Mass Spectrometry-Based Proteomics Strategies.
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    Chapter 9 Production and Purification of Antibodies Against Histone Modifications.
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    Chapter 10 Immunofluorescence of Histone Proteins.
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    Chapter 11 Acid-Urea Gel Electrophoresis and Western Blotting of Histones.
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    Chapter 12 Chromatin Immunoprecipitation of Histone Modifications in Fission Yeast.
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    Chapter 13 A Spiking Strategy for ChIP-chip Data Normalization in S. cerevisiae.
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    Chapter 14 High-Resolution Genome-Wide Mapping of Nucleosome Positioning and Occupancy Level Using Paired-End Sequencing Technology.
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    Chapter 15 Physarum polycephalum for Studying the Function of Histone Modifications In Vivo.
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    Chapter 16 A Method for Large-Scale Screening of Random Sequence Libraries to Determine the Function of Unstructured Regions from Essential Proteins.
Attention for Chapter 3: Purification of Yeast Native Reagents for the Analysis of Chromatin Function-I: Nucleosomes for Reconstitution and Manipulation of Histone Marks.
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Chapter title
Purification of Yeast Native Reagents for the Analysis of Chromatin Function-I: Nucleosomes for Reconstitution and Manipulation of Histone Marks.
Chapter number 3
Book title
Histones
Published in
Methods in molecular biology, January 2017
DOI 10.1007/978-1-4939-6630-1_3
Pubmed ID
Book ISBNs
978-1-4939-6628-8, 978-1-4939-6630-1
Authors

Nicolas Lacoste, Wajid Bhat, Jacques Côté

Editors

Benoit Guillemette, Luc R. Gaudreau

Abstract

Purification of native biological material provides powerful tools for the functional analysis of enzymes and proteins in chromatin. In particular, histone proteins harbor numerous post-translational modifications, which may differ between species, tissues, and growth conditions and are lacking on recombinant histones. Moreover, the physiological substrate of most enzymes that modify histones is chromatin and the majority of these enzymes need to be part of a multiprotein assembly to be able to act on chromatin. For the yeast Saccharomyces cerevisiae different chromatin purification protocols are available but often result in poor yields or rely on genetic manipulation. We present a simple purification protocol that can yield up to 150 μg of pure native chromatin per liter of yeast culture. The purified material can be obtained from mutant cells lacking specific histone modifications and can be used in in vitro chromatin assembly for biochemical studies. Based on the extremely high degree of conservation throughout eukaryotes, this modifiable native chromatin can be used in studies with factors from other organisms including humans.

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Mendeley readers

The data shown below were compiled from readership statistics for 9 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 9 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 3 33%
Researcher 2 22%
Student > Doctoral Student 1 11%
Other 1 11%
Lecturer 1 11%
Other 1 11%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 5 56%
Agricultural and Biological Sciences 3 33%
Nursing and Health Professions 1 11%