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CRISPR

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Cover of 'CRISPR'

Table of Contents

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    Book Overview
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    Chapter 1 Investigating CRISPR RNA Biogenesis and Function Using RNA-seq.
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    Chapter 2 In Vitro Co-reconstitution of Cas Protein Complexes.
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    Chapter 3 Analysis of CRISPR Pre-crRNA Cleavage
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    Chapter 4 Annotation and Classification of CRISPR-Cas Systems.
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    Chapter 5 Computational Detection of CRISPR/crRNA Targets
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    Chapter 6 High-Throughput CRISPR Typing of Mycobacterium tuberculosis Complex and Salmonella enterica Serotype Typhimurium.
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    Chapter 7 Spacer-Based Macroarrays for CRISPR Genotyping
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    Chapter 8 Analysis of crRNA Using Liquid Chromatography Electrospray Ionization Mass Spectrometry (LC ESI MS).
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    Chapter 9 Rapid Multiplex Creation of Escherichia coli Strains Capable of Interfering with Phage Infection Through CRISPR.
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    Chapter 10 Exploring CRISPR Interference by Transformation with Plasmid Mixtures: Identification of Target Interference Motifs in Escherichia coli
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    Chapter 11 CRISPR
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    Chapter 12 Expression and Purification of the CMR (Type III-B) Complex in Sulfolobus solfataricus.
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    Chapter 13 Procedures for Generating CRISPR Mutants with Novel Spacers Acquired from Viruses or Plasmids.
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    Chapter 14 Archaeal Viruses of the Sulfolobales: Isolation, Infection, and CRISPR Spacer Acquisition.
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    Chapter 15 Using the CRISPR-Cas System to Positively Select Mutants in Genes Essential for Its Function.
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    Chapter 16 Analysis of nuclease activity of cas1 proteins against complex DNA substrates.
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    Chapter 17 Characterizing Metal-Dependent Nucleases of CRISPR-Cas Prokaryotic Adaptive Immunity Systems.
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    Chapter 18 Cas3 Nuclease–Helicase Activity Assays
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    Chapter 19 Chemical and Enzymatic Footprint Analyses of R-Loop Formation by Cascade-crRNA Complex
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    Chapter 20 Creation and Analysis of a Virome: Using CRISPR Spacers.
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    Chapter 21 Targeted Mutagenesis in Zebrafish Using CRISPR RNA-Guided Nucleases.
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    Chapter 22 Precise Genome Editing of Drosophila with CRISPR RNA-Guided Cas9.
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    Chapter 23 Targeted Transcriptional Repression in Bacteria Using CRISPR Interference (CRISPRi).
Attention for Chapter 7: Spacer-Based Macroarrays for CRISPR Genotyping
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Chapter title
Spacer-Based Macroarrays for CRISPR Genotyping
Chapter number 7
Book title
CRISPR
Published in
Methods in molecular biology, January 2015
DOI 10.1007/978-1-4939-2687-9_7
Pubmed ID
Book ISBNs
978-1-4939-2686-2, 978-1-4939-2687-9
Authors

Igor Mokrousov, Nalin Rastogi

Editors

Magnus Lundgren, Emmanuelle Charpentier, Peter C. Fineran

Abstract

Macroarray-based analysis is a powerful and economic format to study variations in "clustered regularly interspaced short palindromic repeat (CRISPR)" loci in bacteria. To date, it was used almost exclusively for Mycobacterium tuberculosis and was named spoligotyping (spacer oligonucleotides typing). Here, we describe the pipeline of this approach that includes search of loci and selection of spacers, preparation of the membrane with immobilized probes and spoligotyping itself (PCR and reverse hybridization).

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 16 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 16 100%

Demographic breakdown

Readers by professional status Count As %
Researcher 6 38%
Professor > Associate Professor 2 13%
Student > Ph. D. Student 1 6%
Other 1 6%
Student > Master 1 6%
Other 1 6%
Unknown 4 25%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 3 19%
Agricultural and Biological Sciences 3 19%
Immunology and Microbiology 2 13%
Medicine and Dentistry 2 13%
Unknown 6 38%