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Bacterial Chemosensing

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Cover of 'Bacterial Chemosensing'

Table of Contents

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    Book Overview
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    Chapter 1 The Diversity of Bacterial Chemosensing
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    Chapter 2 Transmembrane Signal Transduction in Bacterial Chemosensing
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    Chapter 3 Two Spatial Chemotaxis Assays: The Nutrient-Depleted Chemotaxis Assay and the Agarose-Plug-Bridge Assay
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    Chapter 4 Quantification of Bacterial Chemotaxis Responses at the Mouths of Hydrogel Capillaries
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    Chapter 5 A Static Microfluidic Device for Investigating the Chemotaxis Response to Stable, Non-linear Gradients
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    Chapter 6 Visualizing Chemoattraction of Planktonic Cells to a Biofilm
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    Chapter 7 Labeling Bacterial Flagella with Fluorescent Dyes
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    Chapter 8 All-Codon Mutagenesis for Structure-Function Studies of Chemotaxis Signaling Proteins
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    Chapter 9 Mutational Analysis of Binding Protein–Chemoreceptor Interactions
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    Chapter 10 In Vitro Assay for Measuring Receptor-Kinase Activity in the Bacillus subtilis Chemotaxis Pathway
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    Chapter 11 FRET Analysis of the Chemotaxis Pathway Response
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    Chapter 12 Monitoring Two-Component Sensor Kinases with a Chemotaxis Signal Readout
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    Chapter 13 Analyzing Protein Domain Interactions in Chemoreceptors by In Vivo PEGylation
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    Chapter 14 Tuning Chemoreceptor Signaling by Positioning Aromatic Residues at the Lipid–Aqueous Interface
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    Chapter 15 Analyzing Chemoreceptor Interactions In Vivo with the Trifunctional Cross-Linker TMEA
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    Chapter 16 Use of Cryo-EM to Study the Structure of Chemoreceptor Arrays In Vivo
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    Chapter 17 Visualizing Chemoreceptor Arrays in Bacterial Minicells by Cryo-Electron Tomography and Subtomogram Analysis
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    Chapter 18 Bacterial Chemoreceptor Imaging at High Spatiotemporal Resolution Using Photoconvertible Fluorescent Proteins
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    Chapter 19 Imaging of Single Dye-Labeled Chemotaxis Proteins in Live Bacteria Using Electroporation
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    Chapter 20 Fluorescence Anisotropy to Detect In Vivo Stimulus-Induced Changes in Chemoreceptor Packing
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    Chapter 21 Chemotaxis to Atypical Chemoattractants by Soil Bacteria
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    Chapter 22 Screening Chemoreceptor–Ligand Interactions by High-Throughput Thermal-Shift Assays
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    Chapter 23 High-Throughput Screening to Identify Chemoreceptor Ligands
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    Chapter 24 Identification of Specific Ligands for Sensory Receptors by Small-Molecule Ligand Arrays and Surface Plasmon Resonance
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    Chapter 25 Fluorescence Measurement of Kinetics of CheY Autophosphorylation with Small Molecule Phosphodonors
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    Chapter 26 Synthesis of a Stable Analog of the Phosphorylated Form of CheY: Phosphono-CheY
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    Chapter 27 Quantitative Modeling of Flagellar Motor-Mediated Adaptation
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    Chapter 28 Molecular Modeling of Chemoreceptor:Ligand Interactions
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    Chapter 29 Phylogenetic and Protein Sequence Analysis of Bacterial Chemoreceptors
Attention for Chapter 15: Analyzing Chemoreceptor Interactions In Vivo with the Trifunctional Cross-Linker TMEA
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Chapter title
Analyzing Chemoreceptor Interactions In Vivo with the Trifunctional Cross-Linker TMEA
Chapter number 15
Book title
Bacterial Chemosensing
Published in
Methods in molecular biology, January 2018
DOI 10.1007/978-1-4939-7577-8_15
Pubmed ID
Book ISBNs
978-1-4939-7576-1, 978-1-4939-7577-8
Authors

Claudia A. Studdert, Diego A. Massazza

Abstract

Chemoreceptors are dimeric proteins that contain a periplasmic or extracellular domain for ligand binding and an extremely well-conserved cytoplasmic domain for output response control. This latter domain consists in a long α-helical hairpin that forms a four-helix coiled-coil bundle in the dimer. Dimers associate into trimers of dimers in the crystal structure obtained for the cytoplasmic domain of the Escherichia coli serine chemoreceptor, Tsr. Further studies confirmed that this crystal structure reflects the basic unit within the in vivo organization of chemoreceptors. The trimers of dimers form large and stable chemoreceptor clusters in all the prokaryotes that have been studied. Here, we describe the use of TMEA, a trifunctional cross-linker that reacts with sulfhydryl groups, as a tool to study the geometry and dynamics of the interaction between receptors of the same or different types in living cells.

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Mendeley readers

The data shown below were compiled from readership statistics for 3 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 3 100%

Demographic breakdown

Readers by professional status Count As %
Professor 1 33%
Unknown 2 67%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 1 33%
Unknown 2 67%