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RNA Scaffolds

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Cover of 'RNA Scaffolds'

Table of Contents

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    Book Overview
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    Chapter 1 A Method to Predict the 3D Structure of an RNA Scaffold
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    Chapter 2 Post-crystallization Improvement of RNA Crystal Diffraction Quality
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    Chapter 3 Expression and Purification of RNA–Protein Complexes in Escherichia coli
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    Chapter 4 Production of Homogeneous Recombinant RNA Using a tRNA Scaffold and Hammerhead Ribozymes
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    Chapter 5 In Vivo Production of Small Recombinant RNAs Embedded in a 5S rRNA-Derived Protective Scaffold
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    Chapter 6 Detection of RNA–Protein Interactions Using Tethered RNA Affinity Capture
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    Chapter 7 A Universal Method for Labeling Native RNA in Live Bacterial Cells
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    Chapter 8 Live Cell Imaging Using Riboswitch-Spinach tRNA Fusions as Metabolite-Sensing Fluorescent Biosensors.
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    Chapter 9 RNA Scaffold: Designed to Co-localize Enzymes
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    Chapter 10 Artificial Ligase Ribozymes Isolated by a “Design and Selection” Strategy
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    Chapter 11 Engineering aptazyme switches for conditional gene expression in Mammalian cells utilizing an in vivo screening approach.
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    Chapter 12 Aptazyme-Based Riboswitches and Logic Gates in Mammalian Cells
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    Chapter 13 Design and Characterization of Topological Small RNAs.
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    Chapter 14 Folding RNA-Protein Complex into Designed Nanostructures.
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    Chapter 15 Simple Method for Constructing RNA Triangle, Square, Pentagon by Tuning Interior RNA 3WJ Angle from 60° to 90° or 108°.
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    Chapter 16 RNA-Mediated CdS-Based Nanostructures.
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    Chapter 17 An Effective Method for Specific Gene Silencing in Escherichia coli Using Artificial Small RNA.
Attention for Chapter 5: In Vivo Production of Small Recombinant RNAs Embedded in a 5S rRNA-Derived Protective Scaffold
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Chapter title
In Vivo Production of Small Recombinant RNAs Embedded in a 5S rRNA-Derived Protective Scaffold
Chapter number 5
Book title
RNA Scaffolds
Published in
Methods in molecular biology, January 2015
DOI 10.1007/978-1-4939-2730-2_5
Pubmed ID
Book ISBNs
978-1-4939-2729-6, 978-1-4939-2730-2
Authors

Victor G. Stepanov, George E. Fox, Stepanov, Victor G., Fox, George E.

Abstract

Preparative synthesis of RNA is a challenging task that is usually accomplished using either chemical or enzymatic polymerization of ribonucleotides in vitro. Herein, we describe an alternative approach in which RNAs of interest are expressed as a fusion with a 5S rRNA-derived scaffold. The scaffold provides protection against cellular ribonucleases resulting in cellular accumulations comparable to those of regular ribosomal RNAs. After isolation of the chimeric RNA from the cells, the scaffold can be removed if necessary by deoxyribozyme-catalyzed cleavage followed by preparative electrophoretic separation of the cleavage reaction products. The protocol is designed for sustained production of high quality RNA on the milligram scale.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 5 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 1 20%
Unknown 4 80%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 2 40%
Researcher 2 40%
Student > Bachelor 1 20%
Readers by discipline Count As %
Agricultural and Biological Sciences 3 60%
Biochemistry, Genetics and Molecular Biology 2 40%