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RNA Scaffolds

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Cover of 'RNA Scaffolds'

Table of Contents

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    Book Overview
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    Chapter 1 A Method to Predict the 3D Structure of an RNA Scaffold
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    Chapter 2 Post-crystallization Improvement of RNA Crystal Diffraction Quality
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    Chapter 3 Expression and Purification of RNA–Protein Complexes in Escherichia coli
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    Chapter 4 Production of Homogeneous Recombinant RNA Using a tRNA Scaffold and Hammerhead Ribozymes
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    Chapter 5 In Vivo Production of Small Recombinant RNAs Embedded in a 5S rRNA-Derived Protective Scaffold
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    Chapter 6 Detection of RNA–Protein Interactions Using Tethered RNA Affinity Capture
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    Chapter 7 A Universal Method for Labeling Native RNA in Live Bacterial Cells
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    Chapter 8 Live Cell Imaging Using Riboswitch-Spinach tRNA Fusions as Metabolite-Sensing Fluorescent Biosensors.
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    Chapter 9 RNA Scaffold: Designed to Co-localize Enzymes
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    Chapter 10 Artificial Ligase Ribozymes Isolated by a “Design and Selection” Strategy
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    Chapter 11 Engineering aptazyme switches for conditional gene expression in Mammalian cells utilizing an in vivo screening approach.
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    Chapter 12 Aptazyme-Based Riboswitches and Logic Gates in Mammalian Cells
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    Chapter 13 Design and Characterization of Topological Small RNAs.
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    Chapter 14 Folding RNA-Protein Complex into Designed Nanostructures.
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    Chapter 15 Simple Method for Constructing RNA Triangle, Square, Pentagon by Tuning Interior RNA 3WJ Angle from 60° to 90° or 108°.
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    Chapter 16 RNA-Mediated CdS-Based Nanostructures.
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    Chapter 17 An Effective Method for Specific Gene Silencing in Escherichia coli Using Artificial Small RNA.
Attention for Chapter 15: Simple Method for Constructing RNA Triangle, Square, Pentagon by Tuning Interior RNA 3WJ Angle from 60° to 90° or 108°.
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Chapter title
Simple Method for Constructing RNA Triangle, Square, Pentagon by Tuning Interior RNA 3WJ Angle from 60° to 90° or 108°.
Chapter number 15
Book title
RNA Scaffolds
Published in
Methods in molecular biology, January 2015
DOI 10.1007/978-1-4939-2730-2_15
Pubmed ID
Book ISBNs
978-1-4939-2729-6, 978-1-4939-2730-2
Authors

Khisamutdinov, Emil F, Bui, My Nguyen Hoan, Jasinski, Daniel, Zhao, Zhengyi, Cui, Zheng, Guo, Peixuan, Emil F. Khisamutdinov, My Nguyen Hoan Bui, Daniel Jasinski, Zhengyi Zhao, Zheng Cui, Peixuan Guo, Khisamutdinov, Emil F.

Abstract

Precise shape control of architectures at the nanometer scale is an intriguing but extremely challenging facet. RNA has recently emerged as a unique material and thermostable building block for use in nanoparticle construction. Here, we describe a simple method from design to synthesis of RNA triangle, square, and pentagon by stretching RNA 3WJ native angle from 60° to 90° and 108°, using the three-way junction (3WJ) of the pRNA from bacteriophage phi29 dsDNA packaging motor. These methods for the construction of elegant polygons can be applied to other RNA building blocks including the utilization and application of RNA 4-way, 5-way, and other multi-way junctions.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 10 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 10 100%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 4 40%
Researcher 2 20%
Student > Doctoral Student 2 20%
Unknown 2 20%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 4 40%
Pharmacology, Toxicology and Pharmaceutical Science 2 20%
Chemistry 2 20%
Unknown 2 20%