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Long Non-Coding RNAs

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Cover of 'Long Non-Coding RNAs'

Table of Contents

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    Book Overview
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    Chapter 1 LncRNA Pulldown Combined with Mass Spectrometry to Identify the Novel LncRNA-Associated Proteins.
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    Chapter 2 Cross-Linking Immunoprecipitation and qPCR (CLIP-qPCR) Analysis to Map Interactions Between Long Noncoding RNAs and RNA-Binding Proteins.
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    Chapter 3 Characterization of Long Noncoding RNA-Associated Proteins by RNA-Immunoprecipitation.
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    Chapter 4 Isolation of Protein Complexes Associated with Long Noncoding RNAs.
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    Chapter 5 Profiling Long Noncoding RNA Expression Using Custom-Designed Microarray.
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    Chapter 6 Long Noncoding RNA Expression Profiling Using Arraystar LncRNA Microarrays.
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    Chapter 7 Nuclear RNA Isolation and Sequencing.
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    Chapter 8 Targeted LncRNA Sequencing with the SeqCap RNA Enrichment System.
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    Chapter 9 ChIP-Seq: Library Preparation and Sequencing.
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    Chapter 10 Stellaris(®) RNA Fluorescence In Situ Hybridization for the Simultaneous Detection of Immature and Mature Long Noncoding RNAs in Adherent Cells.
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    Chapter 11 Simultaneous RNA-DNA FISH.
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    Chapter 12 Visualizing Long Noncoding RNAs on Chromatin.
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    Chapter 13 Non-isotopic Method for In Situ LncRNA Visualization and Quantitation.
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    Chapter 14 Detection of Long Noncoding RNA Expression by Nonradioactive Northern Blots.
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    Chapter 15 Assessment of In Vivo siRNA Delivery in Cancer Mouse Models.
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    Chapter 16 Targeting Long Noncoding RNA with Antisense Oligonucleotide Technology as Cancer Therapeutics.
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    Chapter 17 Characterization of Circular RNAs.
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    Chapter 18 Methods for Characterization of Alternative RNA Splicing.
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    Chapter 19 NONCODEv4: Annotation of Noncoding RNAs with Emphasis on Long Noncoding RNAs.
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    Chapter 20 Computational Analysis of LncRNA from cDNA Sequences.
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    Chapter 21 Analyzing MiRNA-LncRNA Interactions.
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    Chapter 22 Long Noncoding RNAs: An Overview.
Attention for Chapter 11: Simultaneous RNA-DNA FISH.
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Chapter title
Simultaneous RNA-DNA FISH.
Chapter number 11
Book title
Long Non-Coding RNAs
Published in
Methods in molecular biology, January 2016
DOI 10.1007/978-1-4939-3378-5_11
Pubmed ID
Book ISBNs
978-1-4939-3376-1, 978-1-4939-3378-5
Authors

Lan-Tian Lai, Zhenyu Meng, Fangwei Shao, Li-Feng Zhang

Editors

Yi Feng, Lin Zhang

Abstract

A highly useful tool for studying lncRNAs is simultaneous RNA-DNA FISH, which reveals the localization and quantitative information of RNA and DNA in cellular contexts. However, a simple combination of RNA FISH and DNA FISH often generates disappointing results because the fragile RNA signals are often damaged by the harsh conditions used in DNA FISH for denaturing the DNA. Here, we describe a robust and simple RNA-DNA FISH protocol, in which amino-labeled nucleic acid probes are used for RNA FISH. The method is suitable to detect single-RNA molecules simultaneously with DNA.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 12 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Singapore 1 8%
Unknown 11 92%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 3 25%
Student > Bachelor 2 17%
Researcher 2 17%
Professor 1 8%
Other 1 8%
Other 2 17%
Unknown 1 8%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 4 33%
Immunology and Microbiology 2 17%
Neuroscience 2 17%
Agricultural and Biological Sciences 1 8%
Chemical Engineering 1 8%
Other 1 8%
Unknown 1 8%